From 0f645836f193e75c4c3b718369e6fab15b5d19c5 Mon Sep 17 00:00:00 2001
From: Joseph Redmon <pjreddie@gmail.com>
Date: Wed, 11 Feb 2015 03:41:03 +0000
Subject: [PATCH] Detection is back, baby\!

---
 src/utils.c |  298 +++++++++++++++++++++++++++++++++++++++++++++++-----------
 1 files changed, 239 insertions(+), 59 deletions(-)

diff --git a/src/utils.c b/src/utils.c
index 8229b2d..bf02ff3 100644
--- a/src/utils.c
+++ b/src/utils.c
@@ -1,12 +1,67 @@
-#include "utils.h"
 #include <stdio.h>
 #include <stdlib.h>
 #include <string.h>
 #include <math.h>
+#include <unistd.h>
+#include <float.h>
+#include <limits.h>
 
-void error(char *s)
+#include "utils.h"
+
+void pm(int M, int N, float *A)
 {
-    fprintf(stderr, "Error: %s\n", s);
+    int i,j;
+    for(i =0 ; i < M; ++i){
+        printf("%d ", i+1);
+        for(j = 0; j < N; ++j){
+            printf("%10.6f, ", A[i*N+j]);
+        }
+        printf("\n");
+    }
+    printf("\n");
+}
+
+
+char *find_replace(char *str, char *orig, char *rep)
+{
+    static char buffer[4096];
+    char *p;
+
+    if(!(p = strstr(str, orig)))  // Is 'orig' even in 'str'?
+        return str;
+
+    strncpy(buffer, str, p-str); // Copy characters from 'str' start to 'orig' st$
+    buffer[p-str] = '\0';
+
+    sprintf(buffer+(p-str), "%s%s", rep, p+strlen(orig));
+
+    return buffer;
+}
+
+float sec(clock_t clocks)
+{
+    return (float)clocks/CLOCKS_PER_SEC;
+}
+
+void top_k(float *a, int n, int k, int *index)
+{
+    int i,j;
+    for(j = 0; j < k; ++j) index[j] = 0;
+    for(i = 0; i < n; ++i){
+        int curr = i;
+        for(j = 0; j < k; ++j){
+            if(a[curr] > a[index[j]]){
+                int swap = curr;
+                curr = index[j];
+                index[j] = swap;
+            }
+        }
+    }
+}
+
+void error(const char *s)
+{
+    perror(s);
     exit(0);
 }
 
@@ -24,8 +79,8 @@
 
 list *split_str(char *s, char delim)
 {
-    int i;
-    int len = strlen(s);
+    size_t i;
+    size_t len = strlen(s);
     list *l = make_list();
     list_insert(l, s);
     for(i = 0; i < len; ++i){
@@ -39,9 +94,9 @@
 
 void strip(char *s)
 {
-    int i;
-    int len = strlen(s);
-    int offset = 0;
+    size_t i;
+    size_t len = strlen(s);
+    size_t offset = 0;
     for(i = 0; i < len; ++i){
         char c = s[i];
         if(c==' '||c=='\t'||c=='\n') ++offset;
@@ -52,9 +107,9 @@
 
 void strip_char(char *s, char bad)
 {
-    int i;
-    int len = strlen(s);
-    int offset = 0;
+    size_t i;
+    size_t len = strlen(s);
+    size_t offset = 0;
     for(i = 0; i < len; ++i){
         char c = s[i];
         if(c==bad) ++offset;
@@ -66,27 +121,55 @@
 char *fgetl(FILE *fp)
 {
     if(feof(fp)) return 0;
-    int size = 512;
+    size_t size = 512;
     char *line = malloc(size*sizeof(char));
     if(!fgets(line, size, fp)){
         free(line);
         return 0;
     }
 
-    int curr = strlen(line);
-    
-    while(line[curr-1]!='\n'){
-        size *= 2;
-        line = realloc(line, size*sizeof(char));
-        if(!line) malloc_error();
-        fgets(&line[curr], size-curr, fp);
+    size_t curr = strlen(line);
+
+    while((line[curr-1] != '\n') && !feof(fp)){
+        if(curr == size-1){
+            size *= 2;
+            line = realloc(line, size*sizeof(char));
+            if(!line) {
+                printf("%ld\n", size);
+                malloc_error();
+            }
+        }
+        size_t readsize = size-curr;
+        if(readsize > INT_MAX) readsize = INT_MAX-1;
+        fgets(&line[curr], readsize, fp);
         curr = strlen(line);
     }
-    line[curr-1] = '\0';
+    if(line[curr-1] == '\n') line[curr-1] = '\0';
 
     return line;
 }
 
+void read_all(int fd, char *buffer, size_t bytes)
+{
+    size_t n = 0;
+    while(n < bytes){
+        int next = read(fd, buffer + n, bytes-n);
+        if(next <= 0) error("read failed");
+        n += next;
+    }
+}
+
+void write_all(int fd, char *buffer, size_t bytes)
+{
+    size_t n = 0;
+    while(n < bytes){
+        size_t next = write(fd, buffer + n, bytes-n);
+        if(next <= 0) error("write failed");
+        n += next;
+    }
+}
+
+
 char *copy_string(char *s)
 {
     char *copy = malloc(strlen(s)+1);
@@ -113,66 +196,79 @@
 
 int count_fields(char *line)
 {
-	int count = 0;
-	int done = 0;
+    int count = 0;
+    int done = 0;
     char *c;
-	for(c = line; !done; ++c){
-		done = (*c == '\0');
-		if(*c == ',' || done) ++count;
-	}
-	return count;
+    for(c = line; !done; ++c){
+        done = (*c == '\0');
+        if(*c == ',' || done) ++count;
+    }
+    return count;
 }
 
-double *parse_fields(char *line, int n)
+float *parse_fields(char *line, int n)
 {
-	double *field = calloc(n, sizeof(double));
-	char *c, *p, *end;
-	int count = 0;
-	int done = 0;
-	for(c = line, p = line; !done; ++c){
-		done = (*c == '\0');
-		if(*c == ',' || done){
-			*c = '\0';
-			field[count] = strtod(p, &end);
-			if(p == c) field[count] = nan("");
-			if(end != c && (end != c-1 || *end != '\r')) field[count] = nan(""); //DOS file formats!
-			p = c+1;
-			++count;
-		}
-	}
-	return field;
+    float *field = calloc(n, sizeof(float));
+    char *c, *p, *end;
+    int count = 0;
+    int done = 0;
+    for(c = line, p = line; !done; ++c){
+        done = (*c == '\0');
+        if(*c == ',' || done){
+            *c = '\0';
+            field[count] = strtod(p, &end);
+            if(p == c) field[count] = nan("");
+            if(end != c && (end != c-1 || *end != '\r')) field[count] = nan(""); //DOS file formats!
+            p = c+1;
+            ++count;
+        }
+    }
+    return field;
 }
 
-double mean_array(double *a, int n)
+float sum_array(float *a, int n)
 {
     int i;
-    double sum = 0;
+    float sum = 0;
     for(i = 0; i < n; ++i) sum += a[i];
-    return sum/n;
+    return sum;
 }
 
-double variance_array(double *a, int n)
+float mean_array(float *a, int n)
+{
+    return sum_array(a,n)/n;
+}
+
+float variance_array(float *a, int n)
 {
     int i;
-    double sum = 0;
-    double mean = mean_array(a, n);
+    float sum = 0;
+    float mean = mean_array(a, n);
     for(i = 0; i < n; ++i) sum += (a[i] - mean)*(a[i]-mean);
-    double variance = sum/n;
+    float variance = sum/n;
     return variance;
 }
 
-double constrain(double a, double max)
+float constrain(float a, float max)
 {
     if(a > abs(max)) return abs(max);
     if(a < -abs(max)) return -abs(max);
     return a;
 }
 
-void normalize_array(double *a, int n)
+float mse_array(float *a, int n)
 {
     int i;
-    double mu = mean_array(a,n);
-    double sigma = sqrt(variance_array(a,n));
+    float sum = 0;
+    for(i = 0; i < n; ++i) sum += a[i]*a[i];
+    return sqrt(sum/n);
+}
+
+void normalize_array(float *a, int n)
+{
+    int i;
+    float mu = mean_array(a,n);
+    float sigma = sqrt(variance_array(a,n));
     for(i = 0; i < n; ++i){
         a[i] = (a[i] - mu)/sigma;
     }
@@ -180,10 +276,94 @@
     sigma = sqrt(variance_array(a,n));
 }
 
-double rand_normal()
+void translate_array(float *a, int n, float s)
 {
     int i;
-    double sum= 0;
-    for(i = 0; i < 12; ++i) sum += (double)rand()/RAND_MAX;
-    return sum-6.;
+    for(i = 0; i < n; ++i){
+        a[i] += s;
+    }
 }
+
+float mag_array(float *a, int n)
+{
+    int i;
+    float sum = 0;
+    for(i = 0; i < n; ++i){
+        sum += a[i]*a[i];   
+    }
+    return sqrt(sum);
+}
+
+void scale_array(float *a, int n, float s)
+{
+    int i;
+    for(i = 0; i < n; ++i){
+        a[i] *= s;
+    }
+}
+
+int max_index(float *a, int n)
+{
+    if(n <= 0) return -1;
+    int i, max_i = 0;
+    float max = a[0];
+    for(i = 1; i < n; ++i){
+        if(a[i] > max){
+            max = a[i];
+            max_i = i;
+        }
+    }
+    return max_i;
+}
+
+// From http://en.wikipedia.org/wiki/Box%E2%80%93Muller_transform
+#define TWO_PI 6.2831853071795864769252866
+float rand_normal()
+{
+    static int haveSpare = 0;
+    static double rand1, rand2;
+
+    if(haveSpare)
+    {
+        haveSpare = 0;
+        return sqrt(rand1) * sin(rand2);
+    }
+
+    haveSpare = 1;
+
+    rand1 = rand() / ((double) RAND_MAX);
+    if(rand1 < 1e-100) rand1 = 1e-100;
+    rand1 = -2 * log(rand1);
+    rand2 = (rand() / ((double) RAND_MAX)) * TWO_PI;
+
+    return sqrt(rand1) * cos(rand2);
+}
+
+/*
+   float rand_normal()
+   {
+   int n = 12;
+   int i;
+   float sum= 0;
+   for(i = 0; i < n; ++i) sum += (float)rand()/RAND_MAX;
+   return sum-n/2.;
+   }
+ */
+
+float rand_uniform()
+{
+    return (float)rand()/RAND_MAX;
+}
+
+float **one_hot_encode(float *a, int n, int k)
+{
+    int i;
+    float **t = calloc(n, sizeof(float*));
+    for(i = 0; i < n; ++i){
+        t[i] = calloc(k, sizeof(float));
+        int index = (int)a[i];
+        t[i][index] = 1;
+    }
+    return t;
+}
+

--
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